HsaEX1028186 @ hg38
Exon Skipping
Gene
ENSG00000179761 | PIPOX
Description
pipecolic acid and sarcosine oxidase [Source:HGNC Symbol;Acc:HGNC:17804]
Coordinates
chr17:28950513-29045007:+
Coord C1 exon
chr17:28950513-28950694
Coord A exon
chr17:28953364-28953408
Coord C2 exon
chr17:29044859-29045007
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCCTACTGCTCAGGGC
3' ss Score
8.32
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTGCCACTTCCTTGTATGGACAGTGGGGGACTCCAAAGACCCGCTCGGGAGAGGCCCAAAGCCCGGTACCCGGACGTGCTGGGGGAAGCACAAAGGGGCCAACAAGAAGGGGGTGGGGAGGCCTGCCGGTGCAACGAGATGGAGTGGGCTGGCGCCTCGGGAGAGCGAATCGAGGGCGGCGG
Seq A exon
GGCCCAGCTGTGCTGCTGTGTTAACCTGGAGGCATTATGGAACAG
Seq C2 exon
TTCTTTCTACCACACTCCCGAGGAAGCTCCCATGGACAAAGCCGGATAATCCGAAAGGCGTACCTGGAAGACTTTTACACCCGGATGATGCATGAGTGCTATCAGATATGGGCCCAGCTGGAGCACGAGGCTGGAACCCAATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179761_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(13.7=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGGGCCAACAAGAAGG
R:
TATCCGGCTTTGTCCATGGGA
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains