HsaEX1027867 @ hg38
Exon Skipping
Gene
ENSG00000109118 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr17:28950065-28951771:-
Coord C1 exon
chr17:28951467-28951771
Coord A exon
chr17:28950895-28950987
Coord C2 exon
chr17:28950065-28950246
Length
93 bp
Sequences
Splice sites
3' ss Seq
GGTTGGGGGGGCCGGAGCAGAGA
3' ss Score
-6.43
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTTAGTTTGCACACAAACACCAATGGATGAACAGTCCCTAGCTTCCTGCGGCTGCGCCTTGACCCCTACAAGCTTTCTCAAGCGCCTGCGCGAGACCTCAGGTCCCGCCCTTTTGTCTCAGTGCGCTGGCGCAGGGCAGAAAGGTGGGGCTTCGGTCCTCCAGACGAATGCCAGCGCGGCTGCGCGCTGGGGGGTACTCCCTCACCGCGGCTGCGCGGGAGCCAGGCCGCCGGCTGTCACTGCGGTTGCGCGCGGCGAGCGCCGATCCCGGGGCGCCTGCGCGGGTGGCTTTGCGGGCGCTCGCG
Seq A exon
AGAGCACCCAGCCCGGGAGGTGGATGAATGTGGGAGAAAATGGAGACCAAGACGATCGTGTACGACTTGGACACATCAGGGGGGCTGATGGAG
Seq C2 exon
CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGCAGTCGGAAGCCTGAGAAGGAGCCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTCCTGTGCTGCGACCACTGCCCGGCTGCCTTCCACCTCCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109118_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
90%=100=90%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.162 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062824=PHD=PU(52.1=41.0)
Main Inclusion Isoform:
ENST00000584685fB22414
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCAGACGAATGCCAG
R:
GAGCCAGCAGAGCTTGGATTT
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains