HsaEX1036669 @ hg38
Exon Skipping
Gene
ENSG00000063015 | SEZ6
Description
seizure related 6 homolog [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr17:28960805-28964147:-
Coord C1 exon
chr17:28963962-28964147
Coord A exon
chr17:28963777-28963854
Coord C2 exon
chr17:28960805-28960973
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTCTTCATAAGGAAGCCA
3' ss Score
-5.04
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CCTATCTCCTGAGCTGCCACTTTCCCCGTCGTCCAGCTTATGGAGATGTGACTGTCACCAGCCTCCACCCAGGGGGTAGTGCCCGCTTCCATTGTGCCACTGGCTACCAGCTGAAGGGCGCCAGGCATCTCACCTGTCTCAATGCCACCCAGCCCTTCTGGGATTCAAAGGAGCCCGTCTGCATCG
Seq A exon
CCAGAAAATGGCCATGCACCTCAGTGGCATTCATCCAACCTGCACTTATTGAGCATCTACCAGATGAAGGCACCACAG
Seq C2 exon
CTGCTTGCGGCGGAGTGATCCGCAATGCCACCACCGGCCGCATCGTCTCTCCAGGCTTCCCGGGCAACTACAGCAACAACCTCACCTGTCACTGGCTGCTTGAGGCTCCTGAGGGCCAGCGGCTACACCTGCACTTTGAGAAGGTTTCCCTGGCAGAGGATGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000063015_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
NO
C2:
PF0043115=CUB=PU(49.5=94.7)
Main Inclusion Isoform:
ENST00000317338fB25552
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCAAAGGAGCCCGTCTG
R:
TCTCAAAGTGCAGGTGTAGCC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains