HsaINT0148433 @ hg38
Intron Retention
Gene
ENSG00000063015 | SEZ6
Description
seizure related 6 homolog [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr17:28960805-28964147:-
Coord C1 exon
chr17:28963962-28964147
Coord A exon
chr17:28960974-28963961
Coord C2 exon
chr17:28960805-28960973
Length
2988 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCCTGTCCTGGTCTTAACAGCTG
3' ss Score
9.18
Exon sequences
Seq C1 exon
CCTATCTCCTGAGCTGCCACTTTCCCCGTCGTCCAGCTTATGGAGATGTGACTGTCACCAGCCTCCACCCAGGGGGTAGTGCCCGCTTCCATTGTGCCACTGGCTACCAGCTGAAGGGCGCCAGGCATCTCACCTGTCTCAATGCCACCCAGCCCTTCTGGGATTCAAAGGAGCCCGTCTGCATCG
Seq A exon
GTGAGTGCCCAGGGGAAAGGGCTCAGTGCTGAGCAGAGAAGTGAGGTGGGGGCTCATCCCTGCTCTCTGTTGCTCTCTGCCACTTTCATTTGCTCTTCATAAGGAAGCCAGAAAATGGCCATGCACCTCAGTGGCATTCATCCAACCTGCACTTATTGAGCATCTACCAGATGAAGGCACCACAGGTACAAACAGCTGAATTAAACAGGGACTCTGCCCTCAAAGAACCCACATTTCCAGGAAAGGGAGAAAGGAGAAAGCACAGAGGTCACCAATTTCCAGGGGAAGAAGTAAAAAGCACCAATGAAAAGACATAAAGTGACCTGGGAGGCAAGGGCGCAATCATTCTTAGCTGGACATTTAGGAGGCTTCCTAGGGGAGGAGGCACTGCAGGTTTGACATTTAAATGGAGAGAACAACGTGGGCAGGGACATAGAGGCAGGCAGGTGAGGGTGTTTAGGGACACAGAAGACAGCCAGGTTTGGCTGAAGCCTGAGACATGTGGCAATGGAAGGGCCTTGAGTGTCAGGGCAAGATACAGGCTGAGGAGCTGTTGAAGCTTATGAGAAGGGAGGGCCTTAGAATTCCTCAGGAGATGACTGGGAGGCCAGCCAGGCAAGACAGTTTGAACTTAGATTGTGATTTGGGGAATGAAGCAGAGGGAAGTTCCAGAAACTGATGGGAACTGGGAAAAGGGAAAGGGGACTCCCAGGTCTGGTCCTGAGTGATCAGGTCTGGGATTGCTGCCAATGAAAAGGGGCTTGTTGGAGAAAGGAAGACTCAGTGTTTGGTTTGCAGTATGAAAAGCAACTTGGGCTTTTTTTTTTTTTTTTTCTTCGAGACGGAGTCTCGCTCTTTCACCCAGGCCAGACTGCAGTGGCGCTATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACTCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAAGATGGTCTTGATCTCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCGGGCTTTTTCTTTTTAGTGGGTATGGGCTTAGGCTTTTGAATCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATGTCCGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTTCTGCCTCACCCTCCAGAGTAGCTGGGGTTACAGGTGCATGCCACCATACCCAGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGTCTGATCTCGAACTCTTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACTTGAGCCACCATACCCAGCCATGAATCTTATTTCATTCTATAAATTCTTCCTGGGTGCCAGGCACAACCAGAGTTGAATAACACAGATGCTTTCTCAGCCCTCGAGGATCTAGCGGGGAGGCTGGCAAGCAGCTCAGTGCAGAGGATGCTACAATAGGAGTAAAGGCAGAGTGGTGGAGGAGCCCAAGGGATGGAGAGCTACTCCAAGATGAGAGAGGAGGCAAGCAAGGCTTCCCAAGGAGACAGCATGGAAGGATTTCAGAAATATTAGTTTGGGAAAGTGGGGTGGGTTCCTGGAACTGCATATGCAGAGATGTGCAGGCATGAAATAGCACAAGATAGTGAGCACACAGTGAAGTGTGCCTGAAGCAGAGGGTATGCGGGGAGAGGGGACTGAAGCTGAGTCTAGAGAGAGGTGGATTCATAAAGGGCTTGAACACCATTTTCAGCTTTAACTCTATCCTGAGGGTAATGGGGAGCCACTAAGCAATTTTCAGCAAAGGATGGGGCATGATCAGATTTGAAGGGCAGTTCCATTCTGAGACCAAGCTGAGGCAGGTCTGTCCTTTCTGCAGAGAAGAAACTTGCCCCAGCCCCCCAGGAGCTTTACTAGGTTACAATATTCTGCTGCCTTGAGCATTTGGAGACAAAGGTCCTGTGTATTGGTCATGGCAGCCTGGTCTCTGAGAGTTGGGTAGGTCAGAGCTATGTGTCCAGGAGAGGAAAGCACTGCCTGGAACCAGCCATACTCCTCTTGCCTGAGGACCCCTCTCTGGCCTCACATAACCGCCAGGAGTTTGTGGCCAAGTAACCCAGCAATCCTCACAGATAGCCATAGGCAAACTGTTCAGTCTCTCCTTAGAAAGAGAGGACAGCCCCAAGCCAGTAGGGTCAGCACTAGAAAGGTCAGTCAGCCCAGGAACGGCAGTGGTAGTGAGGCCGGGGCGGATGGCATGCACATCAGGTGTTTGCCGCCCGGATCTAGTGCTAACCCCTTTTTACATTCATTCACTCATTTTATTCAACCAACGCTGAACACCAACTCTGTGCCTGGCCTGGAAAGACCTGGTTCCTGCTCCAGGGGGTCCTAGTTAAGGGACATACCCAAACAACTGATTTTAGGAAAGTGGCATGAGGTAGAAGTAGCAGATGTATCCAAGAAGGTTGAAGCCCACAGTAAGGGCTTTAGTAAAGTCTACCTAGGGAGAGTCGGCCTTCTAGAGAAGTCAGCAGAGAGGGAAAGTGACTTACCTGGGCACACAACCAGGCAGTGATACATCTACCCACAGTCAAGAGAGTTACCCTGGTCAGTCCCAGGGGTGTGAAAGGTTAGGCGGCAGGATTCTGGAGCTCAGGCTGCCTGGAGATGCAGGTTCACAGGGCTAAAAGGTTGACCTTCAGGACGATGAGGGCCAAGATGGCAGGGAGGCAAGGTCCCCGCTGCTCCAAGCAGAGGATATAGGGCTGGGATAGGGAGGAAGGCATGTTAGGCTGCCTGGGTTCAGGCAGGGGCCTAGCCTACGTCCTGTCCTGGTCTTAACAG
Seq C2 exon
CTGCTTGCGGCGGAGTGATCCGCAATGCCACCACCGGCCGCATCGTCTCTCCAGGCTTCCCGGGCAACTACAGCAACAACCTCACCTGTCACTGGCTGCTTGAGGCTCCTGAGGGCCAGCGGCTACACCTGCACTTTGAGAAGGTTTCCCTGGCAGAGGATGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000063015:ENST00000360295:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
NA
C2:
PF0043115=CUB=PU(49.5=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains