HsaINT0148433 @ hg19
Intron Retention
Gene
ENSG00000063015 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:15955]
Coordinates
chr17:27287823-27291165:-
Coord C1 exon
chr17:27290980-27291165
Coord A exon
chr17:27287992-27290979
Coord C2 exon
chr17:27287823-27287991
Length
2988 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCCTGTCCTGGTCTTAACAGCTG
3' ss Score
9.18
Exon sequences
Seq C1 exon
CCTATCTCCTGAGCTGCCACTTTCCCCGTCGTCCAGCTTATGGAGATGTGACTGTCACCAGCCTCCACCCAGGGGGTAGTGCCCGCTTCCATTGTGCCACTGGCTACCAGCTGAAGGGCGCCAGGCATCTCACCTGTCTCAATGCCACCCAGCCCTTCTGGGATTCAAAGGAGCCCGTCTGCATCG
Seq A exon
GTGAGTGCCCAGGGGAAAGGGCTCAGTGCTGAGCAGAGAAGTGAGGTGGGGGCTCATCCCTGCTCTCTGTTGCTCTCTGCCACTTTCATTTGCTCTTCATAAGGAAGCCAGAAAATGGCCATGCACCTCAGTGGCATTCATCCAACCTGCACTTATTGAGCATCTACCAGATGAAGGCACCACAGGTACAAACAGCTGAATTAAACAGGGACTCTGCCCTCAAAGAACCCACATTTCCAGGAAAGGGAGAAAGGAGAAAGCACAGAGGTCACCAATTTCCAGGGGAAGAAGTAAAAAGCACCAATGAAAAGACATAAAGTGACCTGGGAGGCAAGGGCGCAATCATTCTTAGCTGGACATTTAGGAGGCTTCCTAGGGGAGGAGGCACTGCAGGTTTGACATTTAAATGGAGAGAACAACGTGGGCAGGGACATAGAGGCAGGCAGGTGAGGGTGTTTAGGGACACAGAAGACAGCCAGGTTTGGCTGAAGCCTGAGACATGTGGCAATGGAAGGGCCTTGAGTGTCAGGGCAAGATACAGGCTGAGGAGCTGTTGAAGCTTATGAGAAGGGAGGGCCTTAGAATTCCTCAGGAGATGACTGGGAGGCCAGCCAGGCAAGACAGTTTGAACTTAGATTGTGATTTGGGGAATGAAGCAGAGGGAAGTTCCAGAAACTGATGGGAACTGGGAAAAGGGAAAGGGGACTCCCAGGTCTGGTCCTGAGTGATCAGGTCTGGGATTGCTGCCAATGAAAAGGGGCTTGTTGGAGAAAGGAAGACTCAGTGTTTGGTTTGCAGTATGAAAAGCAACTTGGGCTTTTTTTTTTTTTTTTTCTTCGAGACGGAGTCTCGCTCTTTCACCCAGGCCAGACTGCAGTGGCGCTATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACTCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAAGATGGTCTTGATCTCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCGGGCTTTTTCTTTTTAGTGGGTATGGGCTTAGGCTTTTGAATCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATGTCCGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTTCTGCCTCACCCTCCAGAGTAGCTGGGGTTACAGGTGCATGCCACCATACCCAGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGTCTGATCTCGAACTCTTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACTTGAGCCACCATACCCAGCCATGAATCTTATTTCATTCTATAAATTCTTCCTGGGTGCCAGGCACAACCAGAGTTGAATAACACAGATGCTTTCTCAGCCCTCGAGGATCTAGCGGGGAGGCTGGCAAGCAGCTCAGTGCAGAGGATGCTACAATAGGAGTAAAGGCAGAGTGGTGGAGGAGCCCAAGGGATGGAGAGCTACTCCAAGATGAGAGAGGAGGCAAGCAAGGCTTCCCAAGGAGACAGCATGGAAGGATTTCAGAAATATTAGTTTGGGAAAGTGGGGTGGGTTCCTGGAACTGCATATGCAGAGATGTGCAGGCATGAAATAGCACAAGATAGTGAGCACACAGTGAAGTGTGCCTGAAGCAGAGGGTATGCGGGGAGAGGGGACTGAAGCTGAGTCTAGAGAGAGGTGGATTCATAAAGGGCTTGAACACCATTTTCAGCTTTAACTCTATCCTGAGGGTAATGGGGAGCCACTAAGCAATTTTCAGCAAAGGATGGGGCATGATCAGATTTGAAGGGCAGTTCCATTCTGAGACCAAGCTGAGGCAGGTCTGTCCTTTCTGCAGAGAAGAAACTTGCCCCAGCCCCCCAGGAGCTTTACTAGGTTACAATATTCTGCTGCCTTGAGCATTTGGAGACAAAGGTCCTGTGTATTGGTCATGGCAGCCTGGTCTCTGAGAGTTGGGTAGGTCAGAGCTATGTGTCCAGGAGAGGAAAGCACTGCCTGGAACCAGCCATACTCCTCTTGCCTGAGGACCCCTCTCTGGCCTCACATAACCGCCAGGAGTTTGTGGCCAAGTAACCCAGCAATCCTCACAGATAGCCATAGGCAAACTGTTCAGTCTCTCCTTAGAAAGAGAGGACAGCCCCAAGCCAGTAGGGTCAGCACTAGAAAGGTCAGTCAGCCCAGGAACGGCAGTGGTAGTGAGGCCGGGGCGGATGGCATGCACATCAGGTGTTTGCCGCCCGGATCTAGTGCTAACCCCTTTTTACATTCATTCACTCATTTTATTCAACCAACGCTGAACACCAACTCTGTGCCTGGCCTGGAAAGACCTGGTTCCTGCTCCAGGGGGTCCTAGTTAAGGGACATACCCAAACAACTGATTTTAGGAAAGTGGCATGAGGTAGAAGTAGCAGATGTATCCAAGAAGGTTGAAGCCCACAGTAAGGGCTTTAGTAAAGTCTACCTAGGGAGAGTCGGCCTTCTAGAGAAGTCAGCAGAGAGGGAAAGTGACTTACCTGGGCACACAACCAGGCAGTGATACATCTACCCACAGTCAAGAGAGTTACCCTGGTCAGTCCCAGGGGTGTGAAAGGTTAGGCGGCAGGATTCTGGAGCTCAGGCTGCCTGGAGATGCAGGTTCACAGGGCTAAAAGGTTGACCTTCAGGACGATGAGGGCCAAGATGGCAGGGAGGCAAGGTCCCCGCTGCTCCAAGCAGAGGATATAGGGCTGGGATAGGGAGGAAGGCATGTTAGGCTGCCTGGGTTCAGGCAGGGGCCTAGCCTACGTCCTGTCCTGGTCTTAACAG
Seq C2 exon
CTGCTTGCGGCGGAGTGATCCGCAATGCCACCACCGGCCGCATCGTCTCTCCAGGCTTCCCGGGCAACTACAGCAACAACCTCACCTGTCACTGGCTGCTTGAGGCTCCTGAGGGCCAGCGGCTACACCTGCACTTTGAGAAGGTTTCCCTGGCAGAGGATGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000063015-SEZ6:NM_001098635:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
NA
C2:
PF0043115=CUB=PU(49.5=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)