HsaINT0148430 @ hg38
Intron Retention
Gene
ENSG00000063015 | SEZ6
Description
seizure related 6 homolog [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr17:28979680-28982039:-
Coord C1 exon
chr17:28981371-28982039
Coord A exon
chr17:28979814-28981370
Coord C2 exon
chr17:28979680-28979813
Length
1557 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGTCTCCTCCTGCCTCCCAGGCC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GACTCTCTTTAGAGGCCCCAACCGTGGGGAAAGGACAAGCCCCAGGCATCGAGGAGACAGATGGCGAGCTGACAGCAGCCCCCACACCTGAGCAGCCAGAACGAGGCGTCCACTTTGTCACAACAGCCCCCACCTTGAAGCTGCTCAACCACCACCCGCTGCTTGAGGAATTCCTACAAGAGGGGCTGGAAAAGGGAGATGAGGAGCTGAGGCCAGCACTGCCCTTCCAGCCTGACCCACCTGCACCCTTCACCCCAAGTCCCCTTCCCCGCCTGGCCAACCAGGACAGCCGCCCTGTCTTTACCAGCCCCACTCCAGCCATGGCTGCGGTACCCACTCAGCCCCAGTCCAAGGAGGGACCCTGGAGTCCGGAGTCAGAGTCCCCTATGCTTCGAATCACAGCTCCCCTACCTCCAGGGCCCAGCATGGCAGTGCCCACCCTAGGCCCAGGGGAGATAGCCAGCACTACACCCCCCAGCAGAGCCTGGACACCAACCCAAGAGGGTCCTGGAGACATGGGAAGGCCGTGGGTTGCAGAGGTTGTGTCCCAGGGCGCAGGGATCGGGATCCAGGGGACCATCACCTCCTCCACAGCTTCAGGAGATGATGAGGAGACCACCACTACCACCACCATCATCACCACCACCATCACCACAGTCCAGACACCAG
Seq A exon
GTCAGCTACCTGCTGGCTTGCAGATGTGGAAATGGGGATGGGGGAGGCTGCGGGGCCCCTAAAAGCCTGTCTCTGACACTGTGCCAGCCTGCCCTGCCCTTTGGCACCAAGGGCCAGCCTGCAGGAGGCATGTAGATTGGACCCAGATAGACCTGAGCTCAAATCCTGATTCTTCAGCCAAGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCCAGTGGATCATCTGAGGTCAGGAGTTCAAGACCCTCCTGGCCAACATGGCGAAACACCATCTCTACTAAAAATACAAAAATGAGCCGGGCATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTCAAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAGAAAAAATCTTGATTCTTCCAACTATAACATGACCCTAGGAATTCTATTTAACATCTCATCTCTGAGCCTCATCTGTAAAATGGCAATAAGAAAATAAACTTCTGGCTGGACACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGACATCAGAAGTTCAAGATTAGTCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGTGTGGAACGAGGTCAGGAGATCGAGACCACCCTTGCTAACACGGTGAAACCCCATCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGGGGGTGCCCGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGTCAGAGCTTGCAGTGAGCCAAGATCATGTCACTGCACGCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAATAGCCAGGCATGGTGGTGTACACCTGTAATCCTAGCTACTCGGGAAGCTGAGCAGGAGAATAGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGCCATTGCACTTCAGCCTGAGCAACAAGAGTAAAACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAGAAAACAAACCTCATTGAGCTACTGTGAAAACTGAGATAAGATTGCACATGTTAGGGGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCATGAGGTCAGGAGATGGAGACTATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAGATTGCACATGGTAGGTGCCTAATAAAAGGTGGTCCCCTTCCTTCAACAGGAGACTAGACATCACAAGAGGTGGTCTTCACCACACACACACACACACACACACACACACACACACACACACACACGGTTCAGCCTTAGTTGGACCACTTCACCAGAGCTGGCACTAGCTTTGTGTCTCCTCCTGCCTCCCAG
Seq C2 exon
GCCCTTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGACTCCCCTACAGACCTCAGCTCCCCCACTGATGTTGGCCTGGACTGCTTCTTCTACATCTCTGTCTACCCTGGCTATGGCGTGGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000063015:ENST00000360295:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGATAGCCAGCACTACA
R:
GCCATAGCCAGGGTAGACAGA
Band lengths:
342-1899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains