GgaINT1024901 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5916262-5917014:-
Coord C1 exon
chr19:5916466-5917014
Coord A exon
chr19:5916396-5916465
Coord C2 exon
chr19:5916262-5916395
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGGTCTCCTTGTCACCCAGCAC
3' ss Score
3
Exon sequences
Seq C1 exon
GCTTCAATGGGCTGGAGAGGAAGACTGGTGAGAGCGCCGAGGCCGAAGGGGACCCCACAGCGCTCCCCACGCCGGCTGAGCGCGAAGCCGAGGCGCGCTTCGTCAGCACAGCACCCACCCTGAAGCTGCTCAACCACCACCCGCTGCTGGAGGACCTGCTGCACGAGGCCTTCCTGAAGAAGGACTACCTGGCCCAGGCGCCCTTCCCACCCGGCCTGCCCGGCCCCGTGCTGCCTGATGAGGCCCTGAGGCCGGACCCTGGACCCCCAGCCCAACACATCCCACCGCGTGCCCCCGCTTTGCCCAGGGTTGCCTTCCCCACCGCCCCACTGACCACACCTGCTGGGCGCTCGGGGCCATGGGGGGAGCCCTGGGGGGTCGCGCCGGGCACTGACCCCTCACAGCCCCCTACTGGGGGGTCAGGATCGAGCCCCGCAGCCCCCAGCCAGGCGCCCATCTTAGGGACCACTGGAGTCTCCGGGGATGAGGAGGGGACCACCACTACCTCCACCATCACCACCACCACCGTCACCACGCTGCAGGGACCAG
Seq A exon
GTGAGCGTGGGGAGGGAGATGGGGGTTCGGGGAGATGTGAGGCTAACACAGGGGTCTCCTTGTCACCCAG
Seq C2 exon
CACCATGCAACCGGACGCTGGCAGGTCCCGAGGGCTGGCTGGTGTCCCCAGAGCCAGCCAGTGCCCCATATGACAGCAGCATGGACTGCACCTACACCATCTCCGTCTACCCTGGCTATGGTGTAGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.901 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(39.6=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACTACCTCCACCATCA
R:
CAGGGTAGACGGAGATGGTGT
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]