BtaINT0131714 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20904782-20906272:-
Coord C1 exon
chr19:20905637-20906272
Coord A exon
chr19:20904916-20905636
Coord C2 exon
chr19:20904782-20904915
Length
721 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGTCTCCCCTTGCCTTCCAGGCC
3' ss Score
11.56
Exon sequences
Seq C1 exon
GACTCTCCTTGGAGGCCCCCACGGAAGGGGAAGGGCAGGCCCCAGGCCTGGAAGAGATGGATGGAGAGTTGACAGCGGCCCCTACACCTGAGCAGCCAGAACCAGGCGTCCACTTCGTCACAACGGCCCCTACCCTGAAGCTGCTTAACCACCACCCCCTGCTGGAGGAATTCCTACAAGAGGGGCAGGAGAAGGACGAGCTGAGGCCTGACCCACCTACAGCGAGTCCCCTGCCCCGCCTGGCCAACCAGGACAGCCGCCCCGTCTTCACCAGCCCCACTCCAGTCATGGTGGCAGCACCTACTCAACCCCAGTCCAGGGAAGGACCCTGGAGCCTGGAGTCAGAACCCCCTGCACTTCGTATCACAGTTGCCCTACCTCCGGGGCCCGGCATGGCAGTGCCCACCCCAGGCCCAGGGGAGAGGCCCAATACCCCACCCCCTAGTGGAGCATGGACTCCAACCCCAGAGGGTCCTGGAGACATAGGCAGGCCCTGGGCTCCAGGGGTCATGTCCCAGACCACAGGGCTCGGGATGGAGGGGACCGTCGCCACCTCCACGGCTTCAGGGGACGATGAGGAGACCACCAGCACCAGTACCATCATTACCACCGCCGTCACCACAGTCCAGCCACCAG
Seq A exon
GTCAGTTACTTGCTGGCTCAGATCCCCATCTAGAGAGGGGGATGGGGAAGCTGGGGGCCCTCTGGATTCCTCTCTCTGTGTCTCTGTGCTGGCCTGCCTTGCCCTTTGGCAGCAAGGGCCAACCCACAGGGAGCATGTGGACTGGAACCAGACCCAGGTTCAAATCCTGACTGGAAGGATTTGAGGTTCAAACCCCAGACCTTGGGGCTTCCCAGGTGGCGCTAGTGGTAAAGAGCCCACCTGCCAGTGCAAGAGACGCAGGAGATGTGGGTTCGATCCCTGGGTCGGGAAGATCCCCTGGAGGAGGGCACAGCAACCCACTCCGGTATTCTTGCCTGGAGAACCCCATGGACAGAGGAGCCTGATGGGCTACAGTCCTTAGGGTCGCAAAGAGTCGGACACGACTGAAGTGCCTTTGCATGCACACCAGACCTTAGGGATTTTATCTAACCTCCCTGAGCCTCTTCTGTAAAATGGCAATAAGAAGACCCACCTCACTGGGTCACTGTAAGAACCGAGATAAGATTGCACACAGTAGGTGCTCAAGAGAAGGTGGTACCCTGCTTTCAACAGGGTAATAGAGCTCCCAAAGATTGAGTGTCATCACATACCAGACATGCACACACACACACACACACACACACACATACACACACGGCAGCCATCGTTGGACCCAAATTGCCAGAGCTAAGTTTAGCTTATGTCTCCCCTTGCCTTCCAG
Seq C2 exon
GCCCTTGCAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGACTCCCCCACAGCCTCCAACTCACCCCCTGATGTCGGCCTGGACTGTTTCTACTACATCTCTGTCTACCCTGGCTACGGTGTGGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979:ENSBTAT00000021257:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.489
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTCAACCCCAGTCCAGG
R:
AGAAATTCCAGCTGCAAGGGC
Band lengths:
358-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]