RnoINT0133914 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64891178-64892569:-
Coord C1 exon
chr10:64891907-64892569
Coord A exon
chr10:64891312-64891906
Coord C2 exon
chr10:64891178-64891311
Length
595 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGTCTCCTCCTGACTCCCAGGCC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GACTCTCCTCAGAGGCTCCAATCACGGGGGAAGGTCAAGCCACGGGCATCAGGGAGATGGATGGGGAGCTGACCGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCACTTCGTCACCACAGCCCCTACCCTCAAGCTACTCAACCACCACCCACTTCTGGAGGAATTTCTTCAAGAGGGGCTAGAAGGGAGAGAGGAAGCTCCGAGGCCGGCACTGCCCTTCCAGCCAGACTCACCTACACCCTTTACTCCAAGCCCCCTTCCCCGCCTCACCAACCAGGACAACCGCCCTGTCTTTACCAGTCCGACGCCAGCTGTAGCTGCGGCACCCACGCAGCCCCACTCCAGAAAGAAACCCTGGAACCCAGAGTCAGAGCCCCCGGAGCTTTACATCACATCTCCCCTCCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCACCCAGAGGACAGACCCAGCACTACACCCCCCAGCCAAGCATGGACTCCAACCCAGGAGGGTCCTGGAGACATGGGCAGACCTTGGGTTCCAGAGATCATGTCTAAGACCACAGGGCTTGGTATCGAGGGGACCATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACCACCACCACCATCATTACCACCGTCACCACAATTCAGCCACCAG
Seq A exon
GTCAGCTACCTGCTGGCTGGCAGGGCTGACAGTGAGGGTGGAGGGCACACCACGTTCCCTAAATGCCTCTGTTTCTAACCCTACACGCACCTGCCCGACCTTTTGCCACCAAGGGTCAGCCCATATAAAGCACGGGGATTGGAATCAGACAACCCCAATTCAAGTTCTGATTCTTCCCATTGTAACACAGCCCTAGGGGTTTTAGTCAGCCTCTCTCAAAGTAGTGATCAGAAACCTTACCCTGTGGCTGGAGAGATGGCTTAGCAGTTAAGAATACTTAACTACTCTTGCAGAGAACCTGGATTCCTAGCCCCCACATGGCCACTAACAACCATCTAACTCTAGTTCCAACGGATCTGATGCCCTCTTCTGGTCTCAGTGGGCACCAGGCACAGAGGTAGTGCACATCCATGCAGGCAAAAAAATCATCACACACACACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGCTCTCATCTATAGCTGAATCTACATCTACCCCACCAGAGCTGGTCCTAGCCTCATGTCTCCTCCTGACTCCCAG
Seq C2 exon
GCCCCTGTAGCTGGAATTTCTCAGGCCCGGAGGGCTCTCTGGATTCCCCTGCGGTCCCCAGCGTCCCCTCTGATGTTGGCCTGGACTGTCTCTACTACATCTCTGTCTACCCTGGATATGGAGTCGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCACATCTCCCCTCCCTC
R:
CAGTCCAGGCCAACATCAGAG
Band lengths:
358-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]