MmuINT0142270 @ mm9
Intron Retention
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77791039-77791346:+
Coord C1 exon
chr11:77791039-77791156
Coord A exon
chr11:77791157-77791243
Coord C2 exon
chr11:77791244-77791346
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTCTTTTGTCCCCTGACAGATT
3' ss Score
10.31
Exon sequences
Seq C1 exon
TTGCCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTTTCCAG
Seq A exon
GTGAGTCTGGCTTTTCTTCCTATTCTGCGTACCCAACTCACTCCTGGCCTGTACTCCTGACTCACAGGCTCTTTTGTCCCCTGACAG
Seq C2 exon
ATTCCAGGGGAAAAGTCCCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-Sez6:NM_021286:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACGCTGCTCACCT
R:
ATGCTGACTCTACCGTGATGC
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: