RnoINT0133912 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64866980-64867286:-
Coord C1 exon
chr10:64867169-64867286
Coord A exon
chr10:64867083-64867168
Coord C2 exon
chr10:64866980-64867082
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGCTCCTCTGTCCCCCACAGACT
3' ss Score
9.79
Exon sequences
Seq C1 exon
TTGCCAAGGCACCTGCCACCTCCAGTGCCCTGGATGCTGCCCACATGGCAGCTGCCATCTTTCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTCTCCAG
Seq A exon
GTGAGTCTGGCTTTTCTTCCTTTTCTGCATGCCCGGCTCAACCCCGGCCTGTACTCCTGACTCAAAGGCTCCTCTGTCCCCCACAG
Seq C2 exon
ACTCCAGGGAAAAAGTCCTCTGCAGCTTCCCGGAACTCATCCTCGCCCCTATAACCGTATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCCATCTTTCTACCA
R:
CCGGTCTCATAAGTTGGATTGTCA
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]