GgaINT1024899 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5911922-5912215:-
Coord C1 exon
chr19:5912095-5912215
Coord A exon
chr19:5912025-5912094
Coord C2 exon
chr19:5911922-5912024
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GACTCCATCTCCTCCCACAGGCT
3' ss Score
9.28
Exon sequences
Seq C1 exon
CCGTGGCCAAAGCTGTGCCCTCGGAGACGGCACTGGAGGGCACCAATGTGGCCATCGCCATCTTCCTGCCTGTGCTGGTGCTGGCTCTGCTCATCGGAGGCGTTTACCTCTACTTCTCCAA
Seq A exon
GTGAGTGCCTGCTGCTCCCCTTGGATCCCCAGCCCCACTGCCACCCGCCCGACTCCATCTCCTCCCACAG
Seq C2 exon
GCTGCAGGGGAAGCCAGCCCTACAGCTGCCCCTTTCCGGATCCCACCCCTATGATCACATCACCGTGGAGTCAGCATTTGACAACCCCACCTATGAGACAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTCCTGCCTGTGCTG
R:
TCCTGTCTCATAGGTGGGGTT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]