HsaEX0047990 @ hg38
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159932006-159941992:-
Coord C1 exon
chr2:159941746-159941992
Coord A exon
chr2:159940378-159940567
Coord C2 exon
chr2:159932006-159932298
Length
190 bp
Sequences
Splice sites
3' ss Seq
GTTTATTGAATTTTATCAAGAAA
3' ss Score
0.68
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACCAAGTCACAGCATCATTCCTCTTGCGGTTGTACTGACACTGATAGTCATTGTGGCCATTTGCACACTTTCCTTCTGCATATACAAGCATAACGGTGGCTTCTTCAGGAGACTTGCAGGGTTTCGGAATCCTTACTATCCTGCAACCAACTTTAGTACAGTATATTTAGAAGAAAATATTCTCATTTCTGATCTTGAGAAGAGTGACCAATAATAATGAGGTCAGAGAATGCCACAGACACCAGG
Seq A exon
AAAAAAGTGTACTGAGCATGGTGGCACGCACCTGTAGTCCCAGCTACTTAGGAGGCTGAGGGAAGAGGATCAACTGAGCCCAGAAGTTGAAGGCTGCAGTGAGCTATGGTTGCACCACTGCACTCCTGCCTGGGCAACTGAATGAGACCCCACCTCAAAAAAGTGCTGTTCTAGAAACAGAGGTACTAAG
Seq C2 exon
ATGACACCTAAAGGTGCAAAAGAAAACCATCTCTGCACACTACCAAACAGACAGTGCGTGAACGAAGCAGACCCTCCTGACCACAGCCAAGGACTGGAGAGCTTGGTGAAACTGGTGCTCAAGGTAGAAATTCCCTGCGATTGCTACTGCAACTTATACTAAACGTCCCAAGTGAAGTGAAGGGAGAAAAAAGAGATATTAAGCAAGAAGGCCCACTTGTTTATGCATTGCTTTAGAAGATAATCTGTAATTGCATATTAATAAGTAAAGTTAACGTTACACTTAAATAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCAGGGTTTCGGAATCC
R:
GCACCAGTTTCACCAAGCTCT
Band lengths:
253-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development