HsaEX1028358 @ hg38
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159932006-159940478:-
Coord C1 exon
chr2:159940378-159940478
Coord A exon
chr2:159933100-159933170
Coord C2 exon
chr2:159932006-159932298
Length
71 bp
Sequences
Splice sites
3' ss Seq
CAAGCACTTGTTTCTTGCAGAGC
3' ss Score
6.89
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
AAGGCTGCAGTGAGCTATGGTTGCACCACTGCACTCCTGCCTGGGCAACTGAATGAGACCCCACCTCAAAAAAGTGCTGTTCTAGAAACAGAGGTACTAAG
Seq A exon
AGCACTTTGCTGTAATTTAGAACAAATTAAGGGAAAAAATCATTCAAGTGCTGTTTTCTTCACACCATGAA
Seq C2 exon
ATGACACCTAAAGGTGCAAAAGAAAACCATCTCTGCACACTACCAAACAGACAGTGCGTGAACGAAGCAGACCCTCCTGACCACAGCCAAGGACTGGAGAGCTTGGTGAAACTGGTGCTCAAGGTAGAAATTCCCTGCGATTGCTACTGCAACTTATACTAAACGTCCCAAGTGAAGTGAAGGGAGAAAAAAGAGATATTAAGCAAGAAGGCCCACTTGTTTATGCATTGCTTTAGAAGATAATCTGTAATTGCATATTAATAAGTAAAGTTAACGTTACACTTAAATAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246-'63-63,'63-62,64-63
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAACTGAATGAGACCC
R:
GCACCAGTTTCACCAAGCTCT
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains