HsaEX0049951 @ hg38
Exon Skipping
Gene
ENSG00000138738 | PRDM5
Description
PR/SET domain 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:120754553-120777281:-
Coord C1 exon
chr4:120777188-120777281
Coord A exon
chr4:120756016-120756142
Coord C2 exon
chr4:120754553-120754638
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATAAGATGATCTTTTCCTAGATG
3' ss Score
4.89
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACACATACAGGAGAAAAGGAGAAAATCTGTCCATATTGTGGCCAGAAATTTGCCAGCAGTGGTACACTCAGAGTTCATATCCGGAGCCACACAG
Seq A exon
ATGTTGCCAAGCCTTTGTCCTACTGACTTGGAAAAGCCACACCTTCCCAGAGTCACGATGATCCTAAGGTCAATAATTCTAGGTCAGCTTACCTAGTGCAAAGGTTGATTTTGTCTCAGAGAAGTTG
Seq C2 exon
GTGAGCGTCCCTATCAATGTCCTTACTGTGAAAAAGGATTCAGTAAAAATGATGGACTGAAGATGCACATTCGTACTCACACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138738_MULTIEX1-2/4=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
A:
NO
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
ENST00000264808fB5487
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATACAGGAGAAAAGGAGAA
R:
TGGTGTGAGTACGAATGTGCA
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development