HsaEX0050464 @ hg19
Exon Skipping
Gene
ENSG00000204314 | PRRT1
Description
proline-rich transmembrane protein 1 [Source:HGNC Symbol;Acc:13943]
Coordinates
chr6:32118145-32119952:-
Coord C1 exon
chr6:32119872-32119952
Coord A exon
chr6:32119586-32119676
Coord C2 exon
chr6:32118145-32118683
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGCCGGCTGCGCCATCCAGCAC
3' ss Score
2.62
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TCCCACCCGCCTCGCCTGGTCTAGCCTCCGTGTTTCCATGACAACTCCAAAGGAACCCAAACTGGGGGCTTGAATGCCGGG
Seq A exon
CACCCAGACTCCAGCACCGGCCGAGGACCCCCACTCCGGCTGCAGGGACCCTGTCCCAGCGAGACCGCAGGCATGTCATCCGAAAAGTCAG
Seq C2 exon
GACTCCCAGACTCAGTCCCTCACACTTCTCCGCCGCCCTACAATGCCCCTCAGCCTCCAGCCGAACCCCCAGCCCCACCGCCACAGGCAGCCCCTTCCTCACACCATCACCACCACCACCACTACCATCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGGGCAGGGGGCCTGGCCTCTTCCGCGGCCACCGCTCAGCGCGGTCCCTCCTCCTCTGCCACGCTGCCGAGGCCCCCCCACCACGCCCCTCCCGGCCCTGCTGCCGGGGCACCCCCACCCGGCTGCGCTACCTTGCCCCGCATGCCACCCGACCCTTACCTGCAGGAGACTCGCTTCGAGGGCCCACTTCCCCCGCCGCCGCCCGCTGCCGCCGCCCCGCCCCCGCCGGCGCCAGCCCAGACTGCCCAGGCCCCTGGCTTCGTGGTGCCCACGCACGCGGGGACTGTGGGCACGCTGCCGCTGGGGGGCTACGTAGCGCCCGGATACCCCCTGCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314_MULTIEX1-3/4=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.969 C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCGTGTTTCCATGACAA
R:
TGGTGGTGATGGTGTGAGGAA
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)