HsaALTA0006728-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000204314 | PRRT1
Description
proline-rich transmembrane protein 1 [Source:HGNC Symbol;Acc:13943]
Coordinates
chr6:32118272-32119714:-
Coord C1 exon
chr6:32119586-32119714
Coord A exon
chr6:32118361-32118683
Coord C2 exon
chr6:32118272-32118360
Length
323 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CCTCCACTCACCTCCCCCAGGAC
3' ss Score
9.53
Exon sequences
Seq C1 exon
CTCTCCATCTCTGCGCTGCTGCCGGCTGCGCCATCCAGCACCCAGACTCCAGCACCGGCCGAGGACCCCCACTCCGGCTGCAGGGACCCTGTCCCAGCGAGACCGCAGGCATGTCATCCGAAAAGTCAG
Seq A exon
GACTCCCAGACTCAGTCCCTCACACTTCTCCGCCGCCCTACAATGCCCCTCAGCCTCCAGCCGAACCCCCAGCCCCACCGCCACAGGCAGCCCCTTCCTCACACCATCACCACCACCACCACTACCATCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGGGCAGGGGGCCTGGCCTCTTCCGCGGCCACCGCTCAGCGCGGTCCCTCCTCCTCTGCCACGCTGCCGAGGCCCCCCCACCACGCCCCTCCCGGCCCTGCTGCCGGGGCACCCCCACCCGGCTGCGCTACCTTGCCCCGCATGCCACCCGACCCTTACCTGCAG
Seq C2 exon
GAGACTCGCTTCGAGGGCCCACTTCCCCCGCCGCCGCCCGCTGCCGCCGCCCCGCCCCCGCCGGCGCCAGCCCAGACTGCCCAGGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCATCTCTGCGCTGCT
R:
CCTGGGCAGTCTGGGCTG
Band lengths:
214-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)