MmuALTA1004414-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015476 | Prrt1
Description
proline-rich transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:1932118]
Coordinates
chr17:34630146-34631171:+
Coord C1 exon
chr17:34630146-34630283
Coord A exon
chr17:34630633-34630955
Coord C2 exon
chr17:34630956-34631171
Length
323 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTCGGCTTTTCCATGGCCAGGCC
3' ss Score
6.13
Exon sequences
Seq C1 exon
CCCAGGCTGGTCTTGAACTTCCCAGTTCTTCACCCTTCCCCGGCTGCTTCACAAGTACAAGGATTACAGGCATGAACCACTATGCCTAGTCCCAGAAGCTTTGTCATGGACCTTAACGGAGGCCCATGAGATTCCCAG
Seq A exon
GCCTTCCAGACTCGGTTCCCCACACTTCACCGCCGCCCTACAATGCCCCCCAGCCACCGGCCGAGCCCCCCATCCCGCCCCCACAAACGGCCCCATCCTCACATCACCACCACCACCACCATTACCACCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGAGCAGGTGGCCTGGCCTCTGCTGCGGCCAGTGCTCAACGCGGTCCTTCGTCTTCCGCCACGCTACCGCGGCCCCCCCACCATGCCCCGCCCGGCCCCGCCGCTGGGGCTCCCCCACCCGGCTGTGCTACCTTACCCCGCATGCCACCCGACCCTTATCTGCAG
Seq C2 exon
GAGACTCGCTTCGAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCCGCCCCGCCCCCACCAGCGCCTGCCCCGACGGCCCAAGCCCCGGGCTTCGTGGTTCCCACGCACGCGGGGGCGGTGGGCACGTTGCCGCTGGGGGGCTACGTGGCGCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACTGCTTATGTCCCTGTGTATCCGGTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015476-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTCTTGAACTTCCCAG
R:
CCACCGGATACACAGGGACAT
Band lengths:
345-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types