HsaEX0050473 @ hg19
Exon Skipping
Gene
ENSG00000164099 | PRSS12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:9477]
Coordinates
chr4:119219888-119229732:-
Coord C1 exon
chr4:119229591-119229732
Coord A exon
chr4:119227100-119227158
Coord C2 exon
chr4:119219888-119220093
Length
59 bp
Sequences
Splice sites
3' ss Seq
CACTCCCATGTTCATTGCAGCAT
3' ss Score
6.72
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTTTTCCTGTCAGACTGATGGATGGAGAAAATAAGAAAGAAGGACGAGTGGAGGTTTTTATCAATGGCCAGTGGGGAACAATCTGTGATGATGGATGGACTGATAAGGATGCAGCTGTGATCTGTCGTCAGCTTGGCTACAA
Seq A exon
CATTATTTGCAATAGCCAAGATGTGGAAACAGCCTAAATGAATGGATGAAGAAAATGTG
Seq C2 exon
GGGTCCTGCCAGAGCAAGAACCATGGCTTACTTTGGAGAAGGAAAAGGACCCATCCATGTGGATAATGTGAAGTGCACAGGAAATGAGAGGTCCTTGGCTGACTGTATCAAGCAAGATATTGGAAGACACAACTGCCGCCACAGTGAAGATGCAGGAGTTATTTGTGATTATTTTGGCAAGAAGGCCTCAGGTAACAGTAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164099_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(20.8=84.6)
C2:
PF0053013=SRCR=PD(57.1=80.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCTGTGATCTGTCGTC
R:
CAGTCAGCCAAGGACCTCTCA
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)