HsaEX0050794 @ hg19
Exon Skipping
Gene
ENSG00000148344 | PTGES
Description
prostaglandin E synthase [Source:HGNC Symbol;Acc:9599]
Coordinates
chr9:132510934-132515326:-
Coord C1 exon
chr9:132515166-132515326
Coord A exon
chr9:132511800-132511921
Coord C2 exon
chr9:132510934-132511016
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTTGGAGACAGAGT
3' ss Score
0.25
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGATCACACCCACAGTTGAGCTGCGCTGGCCAGAGATGCCTGCCCACAGCCTGGTGATGAGCAGCCCGGCCCTCCCGGCCTTCCTGCTCTGCAGCACGCTGCTGGTCATCAAGATGTACGTGGTGGCCATCATCACGGGCCAAGTGAGGCTGCGGAAGAAG
Seq A exon
AGTCTGGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCAAGATCACGGCTCATTGTAGCCTCGACCTCCCAGGCTCAAGCAATCCTCCTGCCTCAGCCCTCCTGCCAAGTAGCTGGGACCACAG
Seq C2 exon
GCCTTTGCCAACCCCGAGGATGCCCTGAGACACGGAGGCCCCCAGTATTGCAGGAGCGACCCCGACGTGGAACGCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148344_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.162
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=61.9)
A:
NO
C2:
PF0112413=MAPEG=FE(20.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCACACCCACAGTTGAGC
R:
GAGGCAGCGTTCCACGTC
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)