HsaEX0050794 @ hg38
Exon Skipping
Gene
ENSG00000148344 | PTGES
Description
prostaglandin E synthase [Source:HGNC Symbol;Acc:HGNC:9599]
Coordinates
chr9:129748655-129753019:-
Coord C1 exon
chr9:129752887-129753019
Coord A exon
chr9:129749521-129749642
Coord C2 exon
chr9:129748655-129748737
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTTGGAGACAGAGT
3' ss Score
0.25
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCCAGAGATGCCTGCCCACAGCCTGGTGATGAGCAGCCCGGCCCTCCCGGCCTTCCTGCTCTGCAGCACGCTGCTGGTCATCAAGATGTACGTGGTGGCCATCATCACGGGCCAAGTGAGGCTGCGGAAGAAG
Seq A exon
AGTCTGGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCAAGATCACGGCTCATTGTAGCCTCGACCTCCCAGGCTCAAGCAATCCTCCTGCCTCAGCCCTCCTGCCAAGTAGCTGGGACCACAG
Seq C2 exon
GCCTTTGCCAACCCCGAGGATGCCCTGAGACACGGAGGCCCCCAGTATTGCAGGAGCGACCCCGACGTGGAACGCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148344-'3-3,'3-1,4-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.162
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=61.9)
A:
NA
C2:
PF0112413=MAPEG=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATCCTGTGGTTAATCAGCG
R:
CTGAGGCAGCGTTCCACG
Band lengths:
178-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development