HsaEX0051451 @ hg38
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr10:98387201-98388508:-
Coord C1 exon
chr10:98388354-98388508
Coord A exon
chr10:98387865-98388084
Coord C2 exon
chr10:98387201-98387307
Length
220 bp
Sequences
Splice sites
3' ss Seq
TAAGAAACCTTTTATTACAGCAC
3' ss Score
3.1
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCCTGTGATTGAGCTCTGCATCCCTTCCTCGCTGGACCCCACCCTGGCTCCCCCTGGCTGCCATGTAGTCTCCCTCTTCACTCAGTACATGCCCTATACGCTGGCTGGAGGCAAGGCCTGGGACGAGCAGGAGAGAGACGCTTATGCAGACAGAG
Seq A exon
CACAGCTGACTGCACGAACCAAAGGAGACGCATGAGCCAGAGAGACAAGGAAGGCTTTCAAAGGAAGGGATGGTCAAGCTGGGTTTCCAAGGATGACTAGGAGCTGGCCAGGCAGCAAAGGGCATTCCAAGCAAGAGAAACAGCTTGATCAGGCCAGGCGTGGGGGCTCATGCCTGTAATTCCAGCACTTCGGGAGGCCGAGGCAGGCGGATCACCCGAG
Seq C2 exon
TGTTTGATTGCATCGAGGTCTATGCCCCTGGCTTCAAGGACTCTGTGGTTGGCAGAGACATCCTCACACCACCAGATTTGGAGAGAATCTTCGGGCTTCCTGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943_MULTIEX1-10/10=9-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.909 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGATTGAGCTCTGCAT
R:
CTCCAGGAAGCCCGAAGATTC
Band lengths:
260-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development