HsaEX1046647 @ hg38
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr10:98387201-98392566:-
Coord C1 exon
chr10:98392432-98392566
Coord A exon
chr10:98391010-98391082
Coord C2 exon
chr10:98387201-98387307
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATGGAGCCTTCTCCTTCCAGGAG
3' ss Score
7.75
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACAGTGGCGAAGGTGCAGGTGAACAGTGAAGGCTGTGTTCAAGGAGTTGTGCTGGAAGATGGCACAGAGGTGAGAAGCAAAATGGTGCTGTCCAACACATCACCGCAGATCACCTTCCTGAAGCTGACGCCACAG
Seq A exon
GAGTGGCTTCCTGAGGAGTTCCTGGAGAGAATCTCTCAGCTGGACACCCGGTCGCCTGTCACCAAGATCAATG
Seq C2 exon
TGTTTGATTGCATCGAGGTCTATGCCCCTGGCTTCAAGGACTCTGTGGTTGGCAGAGACATCCTCACACCACCAGATTTGGAGAGAATCTTCGGGCTTCCTGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943_MULTIEX1-6/10=5-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGGTGAACAGTGAAGG
R:
CTGCCAACCACAGAGTCCTTG
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains