RnoEX6007411 @ rn6
Exon Skipping
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261967288-261969142:-
Coord C1 exon
chr1:261969008-261969142
Coord A exon
chr1:261967655-261967727
Coord C2 exon
chr1:261967288-261967444
Length
73 bp
Sequences
Splice sites
3' ss Seq
ACGGAAGTCTCTCCCTCCAGGAG
3' ss Score
6.38
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACTGTGGCTAAGGTGCAAGTGAACAGCGAAGGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAGAGTCGTCTTGTCCTGTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAG
Seq A exon
GAGTGGCTTCCTGGGGCCTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCCGTTACCAAGATCAATG
Seq C2 exon
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCAGCCCCCAATGCTCCCGGGGACCAGCCACAAGCCCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGCGGCCTACCTTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807-'17-27,'17-24,20-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCACAGGTCACCTTCTTA
R:
CCTTGGCATCTTCAAAGGCCT
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]