BtaEX6100133 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19338051-19340177:-
Coord C1 exon
chr26:19340043-19340177
Coord A exon
chr26:19338462-19338534
Coord C2 exon
chr26:19338051-19338207
Length
73 bp
Sequences
Splice sites
3' ss Seq
GTGGAACCTTCTCTTTTCAGGAG
3' ss Score
8.2
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACAGTGGCTAAAGTACAGGTGAGCAGTGGAGGGCGCGTTCAAGGAGTCGTGCTGCAAGATGGCTCGGAGGTGAGGAGCAAAGTGGTGCTGTCCAACGCGTCGCCACAGATCACCTTCCTGAAGTTAACGCCACAG
Seq A exon
GAGTGGCTTCCTGAGGAGTTCGTGGCGAGAATCGCCCAGCTGGACACCAAGTCGCCTGTTACCAAGATCAATG
Seq C2 exon
TGGCTGTCAACAGGCTGCCTGACTTCCTGGCAGCCCCCAACACTCCCGGGGACCAGCCATTGCCCCATCACCAGTGCTCCATCCACCTGAACTGTGAGGACACCCTCCTTGTCCACCAGGCCTTTGAAGACACCCTGGATGGCCTGCCTTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313-'17-14,'17-11,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGTCGTGCTGCAAGATG
R:
GTGGATGGAGCACTGGTGATG
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]