MmuEX6032968 @ mm10
Exon Skipping
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42733721-42735557:-
Coord C1 exon
chr19:42735423-42735557
Coord A exon
chr19:42734083-42734155
Coord C2 exon
chr19:42733721-42733877
Length
73 bp
Sequences
Splice sites
3' ss Seq
ACAGAAGTCTCTCCTTCCAGGAG
3' ss Score
5.87
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGTCACCACAGGTCACCTTCTTAGAGCTGACACCACAG
Seq A exon
GAGTGGCTTCCCGGGGCTTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCTGTCACCAAGATCAATG
Seq C2 exon
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224-'18-32,'18-30,22-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTCAGAAGCAGAGTCG
R:
GCAGGGTGTCTTCACAGTTCA
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types