GgaEX6040666 @ galGal4
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21796734-21797258:+
Coord C1 exon
chr6:21796734-21796868
Coord A exon
chr6:21796950-21797022
Coord C2 exon
chr6:21797102-21797258
Length
73 bp
Sequences
Splice sites
3' ss Seq
CGGTGCCCTCTCCATCCCAGGAG
3' ss Score
8.15
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
GCCGTGTGCCGCGTGCTGCTGGGATCTGATGGGCAGGCGCAGGGCGTCGTGATGCAGGATGGGACGGAGGTGAGGAGTAAAGTGGTGTTGTCCAACGCCTCCCCCCAGCTCACCTTCCTGGAGCTCACCCCCCAG
Seq A exon
GAGCGGCTGCCAGAGGACTTTGTGCGGCGGATCCAGCAGCTCGACACACGTTCCCCTGTCACCAAAATCAACG
Seq C2 exon
TGGCGGTGGACCGGCTGCCTAGCTTCCTGGCTGCCCCCAACACCCGTGACAGCCAACCTCTGCCCCACCACTGCTGCTCCATCCACCTCAACTGCGAGGGCACACACCTCCTGCACCAGGCTTACACCGAGGCTGCCCACGGGCACCCCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.080 C2=0.094
Domain overlap (PFAM):
C1:
PF0099613=GDI=FE(48.4=100)
A:
PF0099613=GDI=PD(12.1=44.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGGAGGTGAGGAGTAAA
R:
CAGTTGAGGTGGATGGAGCAG
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]