HsaEX0051448 @ hg38
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr10:98390598-98391082:-
Coord C1 exon
chr10:98391010-98391082
Coord A exon
chr10:98390871-98390882
Coord C2 exon
chr10:98390598-98390754
Length
12 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGTGTCCCCCTGCAGCCT
3' ss Score
8.52
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GAGTGGCTTCCTGAGGAGTTCCTGGAGAGAATCTCTCAGCTGGACACCCGGTCGCCTGTCACCAAGATCAATG
Seq A exon
CCTGGTCAGAAG
Seq C2 exon
TGGCCGTAGACAGGCTGCCCAGCTTCCTGGCGGCCCCCAATGCTCCCAGGGGCCAGCCGCTGCCCCATCACCAATGCTCCATCCACCTGAACTGTGAAGACACCCTCCTCCTTCATCAGGCCTTTGAAGATGCCATGGATGGCCTGCCTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-'32-31,'32-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000370575fB5649
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCCTGTCACCAAGATCAA
R:
GATGGAGCATTGGTGATGGGG
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development