HsaALTD0005202-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr10:98390598-98391082:-
Coord C1 exon
chr10:98391010-98391082
Coord A exon
NA
Coord C2 exon
chr10:98390598-98390754
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCTCCTCTTTGGTCCCTCAGTGG
3' ss Score
8.51
Exon sequences
Seq C1 exon
GAGTGGCTTCCTGAGGAGTTCCTGGAGAGAATCTCTCAGCTGGACACCCGGTCGCCTGTCACCAAGATCAATG
Seq A exon
NA
Seq C2 exon
TGGCCGTAGACAGGCTGCCCAGCTTCCTGGCGGCCCCCAATGCTCCCAGGGGCCAGCCGCTGCCCCATCACCAATGCTCCATCCACCTGAACTGTGAAGACACCCTCCTCCTTCATCAGGCCTTTGAAGATGCCATGGATGGCCTGCCTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-32-31,33-31-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTTCCTGAGGAGTTCC
R:
TGTGGGAAGGCAGGCCAT
Band lengths:
228-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains