HsaEX0051453 @ hg19
Exon Skipping
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9313629-9315244:-
Coord C1 exon
chr12:9315193-9315244
Coord A exon
chr12:9314877-9315040
Coord C2 exon
chr12:9313629-9313712
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTTTATGTATGTTTTACAGATG
3' ss Score
10.4
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
GCTGAAGGTATTGAGCAAGAAAAGACTTTCAGTTCTATGACCTGTGCCTCAG
Seq A exon
ATGAAGACATTGAGCCCAAGAGAGCAAGTTAATGTGACTCAGGTGGTACAGACAGGACTAATACCTGGGCTTTCTTGGTTCATACGTAGCCCTTTTACCTGGATAGCCCAGTGGCTGCTCACTGACAAGCCCAGCTGCAGAAGCTTAGAGTGTCCCAGGATGAG
Seq C2 exon
GTGCTAATGTGTCTGAGCAGTTGTCCTTGAAGCTCCCATCAAATGTGGTCAAAGAATCTGCCAGAGCTTCTTTCTCAGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.700 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(2.2=11.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGGTATTGAGCAAGAAAAGAC
R:
ACTGAGAAAGAAGCTCTGGCA
Band lengths:
131-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)