HsaINT0135674 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9313629-9315244:-
Coord C1 exon
chr12:9315193-9315244
Coord A exon
chr12:9313713-9315192
Coord C2 exon
chr12:9313629-9313712
Length
1480 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGGGCTGTCTGTTTCTAAAGGTG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GCTGAAGGTATTGAGCAAGAAAAGACTTTCAGTTCTATGACCTGTGCCTCAG
Seq A exon
GTAAGAGTCCATCTTCATAATCATAGTGAGATCAAAACCACAAAGGGGTATAAACCTCAAGTTACAATGCACATTCATTTTATCTCCCAGTTTTCAGAGTGTTCCATGAAAGTCAGCATAATACTAAATATTTCTTTATGTATGTTTTACAGATGAAGACATTGAGCCCAAGAGAGCAAGTTAATGTGACTCAGGTGGTACAGACAGGACTAATACCTGGGCTTTCTTGGTTCATACGTAGCCCTTTTACCTGGATAGCCCAGTGGCTGCTCACTGACAAGCCCAGCTGCAGAAGCTTAGAGTGTCCCAGGATGAGGTAGAAAGAGAGCAGGGTTAGCCGGGTGTGGTGGCTCACATTTGTAATCCCAGCATTTTGGGAGGCTGAGGCGGGAGGATGACTTGAGGTCAGGGGTTTGAGAACAGCCTGGCCAACATGGTGAAACCCTGTCTCTACGAAAAAAACAAAAATTAGCCAGGCCTGGTGGCGGGCGCCTGTAGTCCCAGCTACATGGGGGGCTGGGGCACGAGAATCGCTTGAGCCGGGCAGGGGGAGGTTGCAGTGAGCCGAAATCACACCACTGCGCTCCAACCTGGGCAACAGAGTGAGACTCTTAAAAAAACAAACAAGCAAACAACAACAACAACAAAAACTAAAGACAGCAGGGTCATGATAAGTTTGAATCCCAAGAGATAGTCTCTAAAACAGCTGCTGACAAAACATATAGCATTTCCTACCCATCTCACTAAAAATGTGTGTTTTCCGTGTAGAAAATAATTTACATTTAAGTTCATCATATCATTAAGAAGTAGTTGTAGCTTTTATACAGAACCGCCACATTATTAGTTCTATGTCCACAGTGTATACAGCACTGTATTTGTCATTTGAGAAGGACTAATTTAAGGTATATTCATGTTATCTATTTATAAACATGGGAATCCATTCAAATATAGTGTAAGGGAGGCAGTAAAATAACTTGTATTATCATGGTTATAAGTCTTAATATTGCTACAAAAGTGGAGAGCGATAGTTCCCCCACTAAGTCTTAGGCTTCTTTTAGAAAGCTACTGAGCACAGCCATGCAAAAATATAGTTAAATGAGAAGAGGAAGGACTCTGGAAGTCACACAGTGCCAAAAGCAATTAGACTATCAAAGGTAGTCTCATCATTAAGTCAAATTCTTATTCCTTGCACCCAGAGTTCCACAAGGAGATATAATAATATTACTGCTAACTCTAATAATAAAATAACTGCAATAATAACAATTGCTCACATTCGTTGAAATTGAATATGTTGCAGATACTGTTCTGAATGTTTTACATGTGTTTTTTCCTCAAATCATCACAATTTACCCAAGGTCACAAAGCAGGGCCAGTACCATATCCAGGGAGTGTGGCTCTGAAGCTCTCACTACATTATAATCACTAAATTATATTGTAATCATAGATGTCCTCCTTTAACATGGGCTGTCTGTTTCTAAAG
Seq C2 exon
GTGCTAATGTGTCTGAGCAGTTGTCCTTGAAGCTCCCATCAAATGTGGTCAAAGAATCTGCCAGAGCTTCTTTCTCAGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(2.2=11.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)