MmuINT0102584 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121826438-121828586:+
Coord C1 exon
chr6:121826438-121826489
Coord A exon
chr6:121826490-121828502
Coord C2 exon
chr6:121828503-121828586
Length
2013 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACTTTCTTTTGCTTATTAAGATG
3' ss Score
6.81
Exon sequences
Seq C1 exon
CCTGAAGGAATCAAGCAAGAGCATACCTTCAGCTCACTGTTCTGTGCATCAG
Seq A exon
GTGAGAACCTTTCAAAACAGGAATTAGACAGTAACTTAAGTCACCTACTTAGAGATCTTGCAAAATTCCTACAAAAAAATCAGAATACTGTCTACCTTATACCCCTAAAATACTAAACTAAGTTTGTAAATTAAGATCATCACTTACCCCAAGCAGCTCTTAAGAGTATAGTTCCCCTGGGACTACAAACTTCACTGTAGCCCTTTTTATTTTTAGAATACAGAAGCCTCTTCATCCATTTCAATACTTAGAAAGGTATAGATGTGGAATGACTGAGATGAACTCACAATTGAAATTTTCTTTAAAATAGGGAAAGGTGGGAATATAGAGAATATTTTGGGAAAAACCATATGTGTTCTTTGTTTAAGCATAAATAGAAAGAGATTTATATGGTTGTAAAATTTCATACATAAGCCAAGCTAAATCATGGTGTGTAGTTAGCATGACATTTTTCTCCAATGGTTGTTTTATGATTTGCCCATTTATCCCTGCTGCTCACTGGAAGCTAACTATTACAGAGAAAATATTGCAACTTATCCCACAAGAGGAAGTTCGCTGTTGCCTATGAGGGACAAGCATAAGGTCAGGGACTGTCCACTCACAATAATGACTCCAAAGCTGGCACCTCTGTTAGCAAATCCGTGTAGTGTCTACTCAAATCATATTTGTCAAAACAATAAAGAATTTACATTTAATTTAATGTAAAATCTATTATTATATGAAAGTTAACAAAACACATGAAATAATGCAAACTTTTTGGTAAAGCAGGTAAACTACTGTAGCAACTCTTAACAGCGGGTGGAAGAAAATCACCATATAATACCAAAATCCTTTTAATGTTTTCCATGAAAGAAAGAGTGGGAAGGTGGTCGCTGTAGATAATTTTTTTAAAGCCAAAGAATGGATAACAAAAGCCATATTCTTTCCACCGGTCAACTCATAACTACTGATTACAAGGCAATCCACTCACCATCCCTGCCATAGGAAAGCAACCCGGAACAGCTGCATGGGATCAGAGAGTTTCCCAAGCAACTCAGGGACCAGGAAGAGCAAAAGGTCGCTCAGGATTTCTCCATTCACTTATCCGGACACACTGGATGTTTACGCATACATTGCTTGGTTCTAGATTTCCATCCTTGAGATAAAACACCGTGACTAAAGCAACTTAGAGAGCTGACCATCTTACATGCTCACAGTCTATCATGAGGCGAAGGCAGGGCAGGAATCCAGAAACAGGAACTGAAGCAGAAGCTGTGGAGGGGTGCAGCTTCCTGTCTTGCTCGACCCTTACTCCGTTTGCTTTCTTATACTCCACAGAATTCTTACACTGGGCCATGACCTACCACATCTATTGTTAAAAAAGAAAAGCCAGCTGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGAGACAGGGGAATTTCTGAGTTCCAGGACAGCCTGGTCTACAAAATGAGTTCCAGGACAGCTAGGGCTATACAGAGAAACCCCATCTCAGAAAAAAAATAATGATGATGATGATGATAATAATAATAATAATGATGATGATGATGATGATGAAAGAAAAGCTTCAAGACCAGCTCACAACCCAGTGTTAGGGAGTCATTTTCTCAGTTGAGTTTCCCTACTCCCCCCAAAACTCTAACTTATGTCAAAGTTCAGACACACAAACACACACGCAAGATTTTCCCACACCAAAATTCAGCCAATAACACATTTTTGTGTGTTTATTGAAACTAATTAAGGCATTGATTAAAGTAGAACTCAGATCACAGAGGCACAGATGTTCCATTTTGGAAAGATGCTTTGCTCCAAGGCAATGGGTGATAAGAGATCATGCTTGGAGCTTGACAAACCTGTGGTATCAGGAATCGTGGATTTGGGATATTTATCTCAAAATCACTTTTCTAGGGAAGCAAGAATGTAGCTCTGAAGACACTGAACTTAGGACTCTTTAGATATGCAGAGTACAGAGATGATCATCTACCACTTTCTTTTGCTTATTAAG
Seq C2 exon
ATGCTGAGATATCTGAAAAAATGTCCCTGGTCCTCCCACCAACAGTAGTGAAAGATTCAGCAAGAGCCCATTTCTCTGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: