HsaEX0052025 @ hg19
Exon Skipping
Gene
ENSG00000017797 | RALBP1
Description
ralA binding protein 1 [Source:HGNC Symbol;Acc:9841]
Coordinates
chr18:9475620-9478393:+
Coord C1 exon
chr18:9475620-9475689
Coord A exon
chr18:9476192-9476284
Coord C2 exon
chr18:9478263-9478393
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGCTGCGATCCTTCCTTCAGGTT
3' ss Score
11.01
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCGGCGGCAGCGTGAGCGCGAGGAGGCGGAGGCTGCGGCGGGGCGGACGGTCGCGCGGCGGCAGGCACAG
Seq A exon
GTTTCAGTGGGAATGGACAGACAGATCTGAAGTTGAAAATTCTTTTCACAACTCATGTTCAACTATGTGTGTTGTCAGAATGCTCTTAATGAG
Seq C2 exon
ACACCATCACTCAGTTTTATTGGTTTTGTCTTATTAGCCTCTGAAGTAGGCAATTATTGGTGTGAACATACATTTTGAAAAACATCTGGAGTCAAGAGTGCACGAGTGTCAACTCAGTGCAAGTACTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000017797-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)