HsaEX0052025 @ hg38
Exon Skipping
Gene
ENSG00000017797 | RALBP1
Description
ralA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:9841]
Coordinates
chr18:9475009-9513289:+
Coord C1 exon
chr18:9475009-9475176
Coord A exon
chr18:9476194-9476286
Coord C2 exon
chr18:9512991-9513289
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGCTGCGATCCTTCCTTCAGGTT
3' ss Score
11.01
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
AGTCTGGTTTAACTGGTTGGAACGACTAAAGCACGCTGGCGCAAGGAAAGCTCTCAACTTCGGGAGCTGAGGCGCAGGCTGGCCAGAGCGTGGAGAGGAAAGCCCTTTCCATCCTCAAGGCCGTTGCAGGAGATGCCCGCGAGCCACCTTCGCCAGCACCACACCGGG
Seq A exon
GTTTCAGTGGGAATGGACAGACAGATCTGAAGTTGAAAATTCTTTTCACAACTCATGTTCAACTATGTGTGTTGTCAGAATGCTCTTAATGAG
Seq C2 exon
GTGTAATGGATAGGTAACAGAGAAGACCTCGTCCCTTCCTAGTCAGGGCATCAGCATGACTGAGTGCTTCCTGCCCCCCACCAGCAGCCCCAGTGAACACCGCAGGGTGGAGCATGGCAGCGGGCTTACCCGGACCCCCAGCTCTGAAGAGATCAGCCCTACTAAGTTTCCTGGATTGTACCGCACTGGCGAGCCCTCACCTCCCCATGACATCCTCCATGAGCCTCCTGATGTAGTGTCTGATGATGAGAAAGATCATGGGAAGAAAAAAGGGAAATTTAAGAAAAAGGAAAAGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000017797_MULTIEX2-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTCTCAACTTCGGGAGC
R:
TGCTGATGCCCTGACTAGGAA
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development