HsaEX0052244 @ hg19
Exon Skipping
Gene
ENSG00000123728 | RAP2C
Description
RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:21165]
Coordinates
chrX:131348162-131353471:-
Coord C1 exon
chrX:131353398-131353471
Coord A exon
chrX:131351306-131351834
Coord C2 exon
chrX:131348162-131348474
Length
529 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTCTCCCCTTCACAGGCC
3' ss Score
12.47
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGGGGACTTCGCTGGAGAGATGGCACCGGCCTGAGGTCAAGGAGAAATTGAACTAAACTCTCCTTTGAAGACT
Seq A exon
GCCGGACGACCCCCGCGGGAGCCGGGGCCCAGAAACCCGCCCGGGCAGCGGTAACTGGAACGGAGCCCTCAGGCCTGAGCCGGCTGGGCTGCGCGAGCAGGAAGCGGGGTCCCTGGGCCCCTTTGTGTGAAGGGCGGGGGAGGAGTGCCGGGCAGCCCCGGGCTGCGGGCTCCTCCGACGTCCGCCTCGCCGCAGGGTCCCCTCGCCGCAGCCCCCACCCTTTCCCTCCCGGGGGCACGCGCCTCCTCGCCACCCTCGCCGGGCTTTTCCCAGGCTCGCCCTCCTCCCCACGCCCCCTGCTCGGGCTGCAGTTCCTATAGGAAGGGCATTACCATCCCTTCCCCACCCTCCCCGACTCTACGCTCTTTCCCCTCCCCCTCCTGTAACTTCCTCTTCTTCCCCGGTTGGGCCCTCTGCTCCTCTGCACTCTCCTCCCCAGTTCGCAGATTTCCGCCCACCTTCCGCCTCGTCTAGCCGCGCCACAGCTAGCGGGGTGATCTTTCCCCCCCTCTGGTAGGAGTTGGTGAAG
Seq C2 exon
GATATCAAGCCAATGAGAGATCAAATTGTCAGAGTGAAGAGATATGAAAAAGTCCCACTAATCCTAGTAGGAAATAAAGTGGATCTGGAACCAGAAAGAGAGGTTATGTCTTCAGAAGGCAGAGCTCTGGCTCAAGAATGGGGCTGTCCTTTCATGGAGACATCGGCAAAAAGTAAATCAATGGTGGATGAACTTTTTGCTGAGATCGTCAGGCAAATGAACTATTCATCCCTGCCGGAGAAGCAAGATCAGTGTTGTACAACTTGTGTCGTCCAGTAAAGAAGATAACCTCAATCATGGCCATACCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123728_MULTIEX1-3/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(53.1=94.5)
C2:
PF0007117=Ras=PD(45.7=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGAGGTCAAGGAGAAAT
R:
TGCTCGGTATGGCCATGATTG
Band lengths:
358-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)