HsaEX0052242 @ hg19
Exon Skipping
Gene
ENSG00000123728 | RAP2C
Description
RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:21165]
Coordinates
chrX:131351024-131353471:-
Coord C1 exon
chrX:131353398-131353471
Coord A exon
chrX:131352260-131352369
Coord C2 exon
chrX:131351024-131351834
Length
110 bp
Sequences
Splice sites
3' ss Seq
GGTAAGGACTGACGTCGCAGGTT
3' ss Score
-1.84
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
CTGGGGACTTCGCTGGAGAGATGGCACCGGCCTGAGGTCAAGGAGAAATTGAACTAAACTCTCCTTTGAAGACT
Seq A exon
GTTTCCAGAGGCCCGTTCCCGAAGCCGGAGTCCCGACCCGAAACCGTCCCCGGCCGGCTCGCTCGCTCAGCAGGGCGCGGCTCCAGCGCCACCCGGCTCGCCCCGAAGAG
Seq C2 exon
GCCGGACGACCCCCGCGGGAGCCGGGGCCCAGAAACCCGCCCGGGCAGCGGTAACTGGAACGGAGCCCTCAGGCCTGAGCCGGCTGGGCTGCGCGAGCAGGAAGCGGGGTCCCTGGGCCCCTTTGTGTGAAGGGCGGGGGAGGAGTGCCGGGCAGCCCCGGGCTGCGGGCTCCTCCGACGTCCGCCTCGCCGCAGGGTCCCCTCGCCGCAGCCCCCACCCTTTCCCTCCCGGGGGCACGCGCCTCCTCGCCACCCTCGCCGGGCTTTTCCCAGGCTCGCCCTCCTCCCCACGCCCCCTGCTCGGGCTGCAGTTCCTATAGGAAGGGCATTACCATCCCTTCCCCACCCTCCCCGACTCTACGCTCTTTCCCCTCCCCCTCCTGTAACTTCCTCTTCTTCCCCGGTTGGGCCCTCTGCTCCTCTGCACTCTCCTCCCCAGTTCGCAGATTTCCGCCCACCTTCCGCCTCGTCTAGCCGCGCCACAGCTAGCGGGGTGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123728_MULTIEX1-1/5=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007117=Ras=PU(53.1=94.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTAAACTCTCCTTTGAAGACT
R:
GGAGGGAAAGGGTGGGGG
Band lengths:
254-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)