HsaEX0052242 @ hg38
Exon Skipping
Gene
ENSG00000123728 | RAP2C
Description
RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21165]
Coordinates
chrX:132217278-132219480:-
Coord C1 exon
chrX:132219370-132219480
Coord A exon
chrX:132218147-132218333
Coord C2 exon
chrX:132217278-132217367
Length
187 bp
Sequences
Splice sites
3' ss Seq
CTGACGTCGCAGGTTTCCAGAGG
3' ss Score
-1.63
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
TGATACGACACAGGGCCCAGGCCAGCTGGAGCCAGAGCTGGGGACTTCGCTGGAGAGATGGCACCGGCCTGAGGTCAAGGAGAAATTGAACTAAACTCTCCTTTGAAGACT
Seq A exon
AGGCCCGTTCCCGAAGCCGGAGTCCCGACCCGAAACCGTCCCCGGCCGGCTCGCTCGCTCAGCAGGGCGCGGCTCCAGCGCCACCCGGCTCGCCCCGAAGAGGTGGGACTTTCCCCACCGGAAGTGATCCCGTCCAGTCTCGGGGAACTGGGGCACCTCAGCCAGTGTGTCAGGGAAACCCTTCCGG
Seq C2 exon
TTCGCAGATTTCCGCCCACCTTCCGCCTCGTCTAGCCGCGCCACAGCTAGCGGGGTGATCTTTCCCCCCCTCTGGTAGGAGTTGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123728_MULTIEX1-2/7=C1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATACGACACAGGGCCCAG
R:
TCACCAACTCCTACCAGAGGG
Band lengths:
199-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development