HsaALTA1021531-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000123728 | RAP2C
Description
RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21165]
Coordinates
chrX:132218232-132219480:-
Coord C1 exon
chrX:132219370-132219480
Coord A exon
chrX:132218334-132218341
Coord C2 exon
chrX:132218232-132218333
Length
8 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GGTAAGGACTGACGTCGCAGGTT
3' ss Score
-1.84
Exon sequences
Seq C1 exon
TGATACGACACAGGGCCCAGGCCAGCTGGAGCCAGAGCTGGGGACTTCGCTGGAGAGATGGCACCGGCCTGAGGTCAAGGAGAAATTGAACTAAACTCTCCTTTGAAGACT
Seq A exon
GTTTCCAG
Seq C2 exon
AGGCCCGTTCCCGAAGCCGGAGTCCCGACCCGAAACCGTCCCCGGCCGGCTCGCTCGCTCAGCAGGGCGCGGCTCCAGCGCCACCCGGCTCGCCCCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123728-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCGCTGGAGAGATGGCA
R:
GGTTTCGGGTCGGGACTCC
Band lengths:
106-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains