HsaEX0055365 @ hg38
Exon Skipping
Gene
ENSG00000232160 | RAP2C-AS1
Description
RAP2C antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40957]
Coordinates
chrX:132218507-132430162:+
Coord C1 exon
chrX:132218507-132218837
Coord A exon
chrX:132239620-132239711
Coord C2 exon
chrX:132429813-132430162
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTTATCTTTGTTTAGACT
3' ss Score
7.43
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GCCAAACATCCCTGGACTAGAAGTTGCAGGGGAAATCAAACAGCCCAGAAAGTTTATTCTCCTTGCTGGTATTTCTTCCACTTGCTATTTTGCTGAGAGATGCATGCAAACTACCCTTAGACTTTCAGATGCAGTGCGTTTTACTTAGCCGTGCCTGACAAACACACAGAACTTTTACCGTCTGGTAGATCCGCCTTGACTTTACCAGCGAATACTAAAGTCACTTAAAAAAAAATCACAAGGCTCGAAAACAGCAGCATTAGAAGTAGACTTTATGGTACTCTGCTCAGCTATGTTCTCATTTGATTCCAACCACTACACGGCAGAAAAG
Seq A exon
ACTGATGAGCTTCTCTGTGCAAGGGTGCCTTTTTGGAGCAATGTCCCCATTCGGTCCATTGATATGAACCACTTCATTGAATGTCTTAGACG
Seq C2 exon
GAAAGAAGACTGAATAATGATTGGAAGAACGCCGGAGTCATCAAGCTCTTTTGATAACTGCATATGTGAACTAGGTCAAGTCACTCTCCCTCAACGGATCACCAGTTTACCCAACTGTAAATGGCAACAATTTTGAACTGAACGTTCTTCCTTCTACAGCCAAAATTCTTCGTTTGCTAGGTTTGTGAAGTGCTTTTATATGTATGAGCGCTTTCTTAACTATGAAGATATCTGAGTCATCGAACTTTTGGTGGGGGCAATCTCATGATCAGTCATGACTAGATTTTAGAGTTTTCTCATCCCCATACTCAAAGTTTTTTTTTTAAGAATAAAAATGAAAAGAAACAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000232160-'2-18,'2-5,7-18
Average complexity
C2
Mappability confidence:
90%=100=85%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTGACTTTACCAGCGAA
R:
CTCCGGCGTTCTTCCAATCAT
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development