HsaEX1030615 @ hg38
Exon Skipping
Gene
ENSG00000232160 | RAP2C-AS1
Description
RAP2C antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40957]
Coordinates
chrX:132264009-132281195:+
Coord C1 exon
chrX:132264009-132264151
Coord A exon
chrX:132278008-132278243
Coord C2 exon
chrX:132281095-132281195
Length
236 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCTCTCTGTTCTAGCCA
3' ss Score
11.51
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CAATTTTGGAAGATAAAGAATAGAATCCTCACAACCATCCTATGAAATGAATCCTCCACCATTTCCGCATTAAGTTTAGAAAACTGAGGCTCGGAGACTCAAGTGACTTATCCAAGGATCACATGGCGGAGACGGGATTCAAG
Seq A exon
CCATCTAAAGCTGGGGCTGGAGTCACACAAGCACCCCTGTGGTTACCAACACTGTGACTGCACTGGGTCAGACCTGAAGCCAACGCAGCACTGGATCTCACCCAAGGCCTGCTGTAACCACTCCCTGGCTACTGCCTATGTTTGCTCAAGGCCCTGGGGCTCTACAATCAGCAGGTGGCAAAGTCAGCCAAGCCTGTGTCCTTCCCTTCAGGGCAACACAGTCCCCCGAGCCCCAG
Seq C2 exon
TTTTAGGGTACATGTGCACAATGTGCAGGTTTACTGCAGCGCTATTCACAATAGCAAAGACTTGGGACCAAGCCAAATGTCCAACAATGATAGACTGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000232160-'9-11,'9-10,10-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATAGAATCCTCACAACCATCCT
R:
AATCCAGTCTATCATTGTTGGACA
Band lengths:
228-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains