HsaEX0052628 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155181872-155230002:+
Coord C1 exon
chr6:155181872-155182132
Coord A exon
chr6:155196915-155197082
Coord C2 exon
chr6:155228864-155230002
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTATCTTGCATCCCAATTAGAAA
3' ss Score
5.29
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTTAATGATGAAATGGCAGGTAATTCACACTTTTGGACAGAGCGCACCGCCCCCGTGGAATCACCCTACAGAAGAGGCCAGCTATAAAGGATGTCTCACACCTTTAAGATCAGTGTTTCTCAATGTGTGGACCATGGATACCTGTATTAGAATACCCAAAGGATTTGTTTAAAATTCAGGCTGAGCCCTTCCCAAGACCTAATAGAGCTAAAAGCTTTGGGAGTAGGTGGAGGAAACCTGCATCTTTACCCAGCAATCCAG
Seq A exon
AAACCTAAAATCACAGCAGAGCCAGGACACGGACTGATGGCTCAATGTCCTAGAATGTTTATGGATTTCACCTGTGCCCTGGGCCTCGCTGGACTTTTCTAGATATCTACAAGTGGCGGCTTGCTCTCTTTCTCCTCATCCCAGTACTGTGGAGTGTGGCTACAAAAG
Seq C2 exon
GCAAGATGATGATGAATGAAGTCCTGGCAGCTTCCTGTGTCCCAGGCCTTGTAGAAATAAATGAGACAGACGTGCTTCAAAGTTCTAATGTGCATCACATCGGATCTTGTTTAAGGAAGCGTTAAAAGGAACCCGCCGTTACCTATTGAGAAGGCTCTGTACTCTCAGGCATTGTTTCTGATTGAATCCAGAGGTTGCAAGCATGCCTTCCTGTATTACCTGTTGGAGCAGGTTTAATTTTATAAATTTTAAACACAAACTCTATGAGTTTCTAGTTCATAATTGTTCTTTTTGGGGATCCACTCAGATGAACAGTATTGCATCTGTAAGAGATACCCACTTCCCAGGACCAGATTTGATTGGAATATCAGTGGCAACAGACTCCATCTGTAGCTCATCCAGTACCAGTGATGGAAAGGACAGATGGCAAGGAAACCCTTTCGGGGGGAAAAAGAAAGTCATATTGTGTTGGACCTACAGATTACTAGAAACATAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'31-31,'31-30,32-31
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCTACAGAAGAGGCCAG
R:
TTCTACAAGGCCTGGGACACA
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)