HsaEX0052628 @ hg38
Exon Skipping
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr6:154832697-154944206:+
Coord C1 exon
chr6:154832697-154833409
Coord A exon
chr6:154875781-154875948
Coord C2 exon
chr6:154944116-154944206
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTATCTTGCATCCCAATTAGAAA
3' ss Score
5.29
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GGTGGTCCAAAAGGCTTACATGAAGAAAGAGGTAGATTTCGGTCTGGAAACTATCGATTTGATCCTAGAAGTGGTCCTTGGAACCGAGGATTTGGACAAGAAGTTCACAGAGATTTTGATGACCGCAGAAGACCCTGGGAGAGGCAAAGGGATAGGGATGACAGAGATTTTGATTTCTGCAGAGAAATGAATGGAAATCGTCTTGGACGAGACAGAATTCAAAACACTTGGGTTCCCCCTCCTCATGCTCGGGTTTTTGATTATTTTGAAGGGGCCACTTCTCAACGAAAAGGTGATAATGTGCCTCAGGTTAATGGTGAAAATACAGAGAGACATGCTCAGCCACCACCTATACCAGTACAGAATGATCCTGAACTTTATGAAAAACTGACATCTTCAAATGAAATAAACAAGGAGAAGAGTGACACAGTTGCTGATATAGAAAGTGAACCAGTGGTAGAAAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAG
Seq A exon
AAACCTAAAATCACAGCAGAGCCAGGACACGGACTGATGGCTCAATGTCCTAGAATGTTTATGGATTTCACCTGTGCCCTGGGCCTCGCTGGACTTTTCTAGATATCTACAAGTGGCGGCTTGCTCTCTTTCTCCTCATCCCAGTACTGTGGAGTGTGGCTACAAAAG
Seq C2 exon
GACAGAATGACTTGGAAGATAACGGAGCTTCGAAGCTTCTAGCAGAATATGAAGTCTTTCGTCTTCAGCTACCTGGGTTAAGTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGACATGCTCAGCCA
R:
ACCCAGGTAGCTGAAGACGAA
Band lengths:
254-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development