HsaEX0053300 @ hg19
Exon Skipping
Gene
ENSG00000143344 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:30281]
Coordinates
chr1:183605208-183711424:+
Coord C1 exon
chr1:183605208-183605636
Coord A exon
chr1:183666538-183666647
Coord C2 exon
chr1:183711261-183711424
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCCTTTTCTACTAGTGT
3' ss Score
8.54
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGAAACGCTTTTCTGCGGTCCAGTCTAGGGGGTCTCAGATTGGCGGGGATGGGCAGCAGCGGCAGGTGGCCTTGGCTTTTGCTGCAGCCGTCAACGACCTATCATCGGGGTCCTGCGTAAGGTCCGGCTGGCTGGGACTTGGCTGTGGGTGGGATGGACTGGCTGCCGGACCGAGTGCCCTGCAGTTGGTAGGAGTATGAGGCAGAGTGATGCACACCCGGGCGCCCAGCATCGTTCTAATTGCCGGAGACATTGCCTCAGACTGTGCGCTGCTAGAGGCTGCGTTCCTGAGCAGGAAGCCCGTTTCCTGGGATTGGAACTACCCTTCTTGGCCAGCGGGAAGTCCCCAAGGACGGAGTCGAAAGGTCAAATCTTATCTGTCAGTGCTGTGTGACAGCATCGCAACGGGATCTGCAGAACCTGAACTCG
Seq A exon
TGTGCAGTTTCCTCAAGGGCAGAGATTTTGTCCATCTTGTCCACTACTATATGCCAAGTGTTTGGAACAGTTTGCACGGAGGAATGGTTCCTGAATGAATTGAATGCATG
Seq C2 exon
ATCCGTAATGCCTCCTGCCTGCCTCTTTCAAGATGGAGGTGAAACCTGTGGGAGAACCTACTCAAGAGGTGTCTAAATTCAAACTTTCCACCAAGGTAGAAAGCACGGGACACTGGCTGGTGGAAGATCATGTTCGAATATGGGAAGTTTTAAAGACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143344-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.182
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTTTCCTGGGATTGGAAC
R:
CAGTGTCCCGTGCTTTCTACC
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)