HsaEX0053300 @ hg38
Exon Skipping
Gene
ENSG00000143344 | RGL1
Description
ral guanine nucleotide dissociation stimulator like 1 [Source:HGNC Symbol;Acc:HGNC:30281]
Coordinates
chr1:183636085-183742289:+
Coord C1 exon
chr1:183636085-183636501
Coord A exon
chr1:183697403-183697512
Coord C2 exon
chr1:183742126-183742289
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCCTTTTCTACTAGTGT
3' ss Score
8.54
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTGCGGTCCAGTCTAGGGGGTCTCAGATTGGCGGGGATGGGCAGCAGCGGCAGGTGGCCTTGGCTTTTGCTGCAGCCGTCAACGACCTATCATCGGGGTCCTGCGTAAGGTCCGGCTGGCTGGGACTTGGCTGTGGGTGGGATGGACTGGCTGCCGGACCGAGTGCCCTGCAGTTGGTAGGAGTATGAGGCAGAGTGATGCACACCCGGGCGCCCAGCATCGTTCTAATTGCCGGAGACATTGCCTCAGACTGTGCGCTGCTAGAGGCTGCGTTCCTGAGCAGGAAGCCCGTTTCCTGGGATTGGAACTACCCTTCTTGGCCAGCGGGAAGTCCCCAAGGACGGAGTCGAAAGGTCAAATCTTATCTGTCAGTGCTGTGTGACAGCATCGCAACGGGATCTGCAGAACCTGAACTCG
Seq A exon
TGTGCAGTTTCCTCAAGGGCAGAGATTTTGTCCATCTTGTCCACTACTATATGCCAAGTGTTTGGAACAGTTTGCACGGAGGAATGGTTCCTGAATGAATTGAATGCATG
Seq C2 exon
ATCCGTAATGCCTCCTGCCTGCCTCTTTCAAGATGGAGGTGAAACCTGTGGGAGAACCTACTCAAGAGGTGTCTAAATTCAAACTTTCCACCAAGGTAGAAAGCACGGGACACTGGCTGGTGGAAGATCATGTTCGAATATGGGAAGTTTTAAAGACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143344_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.186
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTTTCCTGGGATTGGAAC
R:
CAGTGTCCCGTGCTTTCTACC
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development