HsaEX0053314 @ hg19
Exon Skipping
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:HGNC Symbol;Acc:9769]
Coordinates
chr6:33264809-33271025:-
Coord C1 exon
chr6:33267157-33271025
Coord A exon
chr6:33266647-33267005
Coord C2 exon
chr6:33264809-33264892
Length
359 bp
Sequences
Splice sites
3' ss Seq
CTGCTCCTGCCTTCCCCCAGGGG
3' ss Score
11.57
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
TGCTGTAACCCCGCGCCGGCATAGGGACCTAAGGCCCACTGGAGGGCGCTCATCAAGTAGCTGCTGGATGTTGACGAAGGAAGCGGCGGCGCAGCTCAGGGATCTCCGAGTCAGGACGGTCGGCCAGACCCACGGGGTAACGGGTCTAATCGTGTAGGAATAAAGCTGTATTCCAGTGCTTCCAAACGGTTCTCTCATTCCAACCCCTTTCCAAGCTCAATGAATATTCCAATCACCTCTGGTCCCTTCCAGTGACCCTGAACCGCTCAGAGAACGCCCCGTCGACACCGTTCGGGGCGGGCGCCACTACTGGCGCATGAGATGCGCTCAAGCAGAGGGTACTCCACCAGCGAGGATACACCGAGCCGACGGGGATCTCGGTCTCGGCGCCGGAAGCCTCTGAGAGCCGAATCTGGAACCGGATGTGGCTGCTTCCTGCCCCGCCCCCTGCCGAGGGGGCGGGAATCGAGGGCCCTTCGGAAAACCCGGCCGGGATTTCG
Seq A exon
GGGCTGGAGACTGGAATCTTTATTCCAGTTCATTGCGGGTCGACGTGGTCTCCAGAATCCCCGAGTGTAGAGGCGGAGGACAGTGGAGCTGGGGACTCGGGCGCCTGGGTCCTGGTCCCTGAGCGTCCAGCGCTCCCCTAGTCCGCGGCCCTGGCTCCTGTCCTCACTTCCTTCCCCTTTTGGCTCCTGCTCTCGGAGCGGGCGGACGCGGGGGGGAGCGGAAAGGGCGGGAGGGCCCAGGAGCCCGGCGGGGGGGTTCAAGGGGGTACGGAAAAGCCGGGGAGGGGACTCGGTCCGGGGCCGGAGACCGACGGCAACAGCGGCTCAGGACCCACGCTGCCCCCACCCCTCCCGAGCAG
Seq C2 exon
GCCCCTGTGTCCGTCTGGGATGAGGAGGAGGATGGTGCCGTGTTTACCGTCACAAGCCGCCAATATCGACCTCTTGATCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441_MULTIEX2-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.556
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTCTCTCATTCCAACCCC
R:
CCATCCTCCTCCTCATCCCAG
Band lengths:
349-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)