HsaEX0053315 @ hg19
Exon Skipping
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:HGNC Symbol;Acc:9769]
Coordinates
chr6:33264809-33267101:-
Coord C1 exon
chr6:33266647-33267101
Coord A exon
chr6:33266232-33266428
Coord C2 exon
chr6:33264809-33264892
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCCACCCCGTCTCTCCCCAGGCG
3' ss Score
11.89
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCGGCTCTCTCTCCGCCTGAAACGCTTCCCGCGGGAGTTTTAGCCGTGTTATTGTTGGGGAAGGGAATGTCAAATTCTGCTCCTGCCTTCCCCCAGGGGCTGGAGACTGGAATCTTTATTCCAGTTCATTGCGGGTCGACGTGGTCTCCAGAATCCCCGAGTGTAGAGGCGGAGGACAGTGGAGCTGGGGACTCGGGCGCCTGGGTCCTGGTCCCTGAGCGTCCAGCGCTCCCCTAGTCCGCGGCCCTGGCTCCTGTCCTCACTTCCTTCCCCTTTTGGCTCCTGCTCTCGGAGCGGGCGGACGCGGGGGGGAGCGGAAAGGGCGGGAGGGCCCAGGAGCCCGGCGGGGGGGTTCAAGGGGGTACGGAAAAGCCGGGGAGGGGACTCGGTCCGGGGCCGGAGACCGACGGCAACAGCGGCTCAGGACCCACGCTGCCCCCACCCCTCCCGAGCAG
Seq A exon
GCGCCCCCATGGCCCGACCCCGCTGATTCCTTCACTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAGCCCCCCCGGGGGAGTCGTACTGAGCAGCTTCCGAAGCCGGGACCCCGAAGAGGGTGGGGGCCCAGGTGGCCTGGTCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
Seq C2 exon
GCCCCTGTGTCCGTCTGGGATGAGGAGGAGGATGGTGCCGTGTTTACCGTCACAAGCCGCCAATATCGACCTCTTGATCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441_MULTIEX2-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.887 C2=0.556
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTCACTTCCTTCCCCT
R:
GTAAACACGGCACCATCCTCC
Band lengths:
249-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)