BtaEX0030268 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7413192-7414957:-
Coord C1 exon
chr23:7414882-7414957
Coord A exon
chr23:7414482-7414681
Coord C2 exon
chr23:7413192-7413275
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCGCTCCTGTCTCTCCTCAGGCG
3' ss Score
11.48
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGGGACGTGATCCGGGGCCGGAGACCGACGGGAACGGCAACTCGGGAGCCGCGCTGCCCCCACCCGTCCTGAGCAG
Seq A exon
GCGCCCCCATGGCCCGACCCCGCTGACTCCTTCAGCCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTGTGGGACACGAGCCCCCCTGGGGGAGTCGTGCTGAGCAGCTTCCGGAGTCGAGACCCCGAAGAGGGTGGGGGCCCCAGTGGCCGGGGCGGGGGCGGGGGGCAGGAGGAGGAAGACGACGACGACGACGACGAG
Seq C2 exon
GCCCCTGTGTCTGTCTGGGAGGAGGAGGAGGATGGTGCTACCTTTACAGTCACAAGTCGCCAGTATCAGCCTCTTGATTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.830 C2=0.964
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development