RnoEX0075470 @ rn6
Exon Skipping
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5464436-5466265:-
Coord C1 exon
chr20:5466189-5466265
Coord A exon
chr20:5465788-5465985
Coord C2 exon
chr20:5464436-5464519
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCGTCTCTCCCCAGGCA
3' ss Score
11.65
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGACTCGGTAGAGGGCCAGAGACCGACAAGAACAGAGGCCCGGGACCCGCGCGCAGCCCCTCACCCTTCCCGAGCAG
Seq A exon
GCACCCCCAATGGCCCGACCCCGCTGATTCCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAACCCCCCCGGGGGAGTCGTGTTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
Seq C2 exon
GCTTCTGTGTCAATCTGGGATGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTATAGGCCTCTTGATCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.942 C2=0.893
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGTAGAGGGCCAGAGAC
R:
CGAGGGATCAAGAGGCCTATACT
Band lengths:
158-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]