MmuEX0039589 @ mm10
Exon Skipping
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33929582-33931809:+
Coord C1 exon
chr17:33929582-33930044
Coord A exon
chr17:33930245-33930441
Coord C2 exon
chr17:33931726-33931809
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCGTCTCTCCCCAGGCG
3' ss Score
11.83
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTAACGGGGTCGCGCCACTGCTAGGGCACTTTCCTCGGCAGTTGCAGCGCCGCTCTGGTTAGAAAAAGTGACTTAAAATTCCGTGTTTGCCTTCCTGTGGAGGCTTGAGACAGGACCCTGGTCTCCAGCGTGTCTGCTGCGAGACGCGGGCTTCAGAGCCACCGAGTGGGGCTGCAAGGGACAGCGGAGTAGTGCACCTGCAGCCTGCGTCCCAGCCCCTGGCGTCCAGCACTCCCCTAGTCGCTCTCCCTGGCTCCTGTCCTCACTTCCTTCCCTTTTTGGCTCCTGCTGTCGGGCGGACGCGGGGAGGGGGGAAGCGGAAAGGGCGGGAGGGCCCGGGAGCCCGGCGGGGTGCAGGAGGGGGGCATCGCGGAAAAGCCGGGGAGGGGACTCGGTAGAGGGCCAGAGACCGACAAGAACAGAGGCCCGGGACCCGCGCGCAGCCCTCGCCCTTCCCGAGCAG
Seq A exon
GCGCCCCCATGGCCCGACCCCGCTGATTGCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGACCCCCCCCGGGGGAGTCGTGCTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGATGAGGAAGAAGAAGAG
Seq C2 exon
GCTTCTGTGTCAGTCTGGGACGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTACAGGCCTCTTGACCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.904 C2=0.893
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTTTTTGGCTCCTGCTG
R:
TGGCGGCTTGTGACAGTAAAG
Band lengths:
255-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types