Special

MmuEX0039589 @ mm9

Exon Skipping

Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34066839-34068754:+
Coord C1 exon
chr17:34066839-34066989
Coord A exon
chr17:34067190-34067386
Coord C2 exon
chr17:34068671-34068754
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCGTCTCTCCCCAGGCG
3' ss Score
11.83
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGAAGCGGAAAGGGCGGGAGGGCCCGGGAGCCCGGCGGGGTGCAGGAGGGGGGCATCGCGGAAAAGCCGGGGAGGGGACTCGGTAGAGGGCCAGAGACCGACAAGAACAGAGGCCCGGGACCCGCGCGCAGCCCTCGCCCTTCCCGAGCAG
Seq A exon
GCGCCCCCATGGCCCGACCCCGCTGATTGCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGACCCCCCCCGGGGGAGTCGTGCTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGATGAGGAAGAAGAAGAG
Seq C2 exon
GCTTCTGTGTCAGTCTGGGACGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTACAGGCCTCTTGACCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=0.904 C2=0.893
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000041082





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr6:33298455-33298651 
ALTERNATIVE
HsaEX0053315
(RGL2)
Human
(hg19)
chr6:33266232-33266428 
ALTERNATIVE
HsaEX0053315
(RGL2)
Rat
(rn6)
chr20:5465788-5465985 
HIGH PSI
RnoEX0075470
(Rgl2)
Cow
(bosTau6)
chr23:7414482-7414681 
ALTERNATIVE
BtaEX0030268
(RGL2)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAAGCGGAAAGGGCGGGA

				
R: 
CAAGGGGTCAAGAGGCCTGTA

				
Band lengths: 
234-431

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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